Natural language-driven spatial transcriptomics analysis via MCP. Integrates 60+ analytical methods across 15 categories including preprocessing, visualization, spatial statistics, cell communication, deconvolution, and trajectory analysis.

Installation

⭐ RecommendedPython pip
pip install chatspatial

Alternative Installation Methods

Python
python --version # Should be 3.10+

💡 Tip: Make sure you have the appropriate package manager installed. Refer to the official documentation for detailed installation instructions.

Compatibility Matrix

Filter:

Cursor

STDIO
stdio:Auto-detected (unverified)

Claude Desktop

STDIO
stdio:Auto-detected (unverified)

MCP Compatible

STDIO
stdio:Auto-detected (unverified)
Verified - Tested by community
Unverified - Not yet tested
⚡ STDIO🌊 SSE🌐 HTTP

Server Information

License:unknown
Classification:active
Source:MCP Registry

Quick Stats

Transports:
STDIO
Compatible Clients:3
Install Methods:2

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